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    • Sequencing & GenotypingAnalysis of RNA sequencing data with tools such as FastQC, STAR (read mapping), Picard, samtools (indexing), HTSeq (read quantification).
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STAR

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STAR –waspOutputMode SAMtag vs WASP

Posted by By BIOLINFO 10 February 2023Posted inSequencing & GenotypingNo Comments
This time, we will compare STAR --waspOutputMode SAMtag vs WASP. Both of them perform allele-specific read mapping. STAR STAR is a well-known free software that align reads to a reference…
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STAR –quantMode GeneCounts vs HTSeq

Posted by By BIOLINFO 3 February 2023Posted inSequencing & GenotypingNo Comments
In this post, we will compare STAR --quantMode GeneCounts vs HTSeq. Their goal is to perform gene quantification during or after read mapping, respectively. To achieve this, they need a…
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